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    Home » Recipes » Cupcakes

    Lemon Poppy Seed Cupcakes

    Modified: Mar 22, 2025 · Published: Feb 27, 2024 by Karissa Parrish · This post may contain affiliate links

    Jump to Recipe Print Recipe

    These lemon poppy seed cupcakes are moist lemon cupcakes filled with crunchy poppy seeds and topped with a creamy lemon buttercream frosting. They make for a perfect springtime treat!

    ​This post is sponsored by Lifeway. However, all thoughts and opinions are my own. Thank you for supporting the brands that make Ginger Snap's Baking Affairs possible!

    Lemon poppy seed cupcake with a bite taken out of it and topped with a lemon poppy seed buttercream frosting.

    These lemon poppyseed cupcakes are bursting with fresh lemon flavor in both the cupcake batter and frosting. I took inspiration from my favorite lemon cupcake recipe to create these!

    I used lemon juice and lemon zest to give these cupcakes a bright lemon flavor. The poppy seeds also adds a nice crunch to every bite!

    Looking for more lemon desserts? Then check out these: fresh lemon curd cookies, lemon blackberry cake, and mini lemon cheesecakes.

    Jump to:
    • Why You'll Love These Cupcakes
    • Lifeway Kefir
    • Ingredients Needed
    • Instructions
    • Lemon Frosting
    • Storage Tips
    • Expert Baking Tips
    • Recipe Variations
    • Recipe FAQs
    • More Cupcake Recipes
    • 📖 Recipe
    Lemon cupcakes with fresh lemon juice and zest. White flowers and lemon wedges are in the background.

    Why You'll Love These Cupcakes

    • They have a soft and fluffy texture.
    • Fresh lemon juice and zest are used.
    • Poppy seeds are both in the frosting and cupcakes.
    • The lemon frosting is smooth and creamy.
    • All you need are two mixing bowls in order to make the cupcake batter!

    I'm a big fan of lemon poppy seed muffins, so I was excited to create these delicious cupcakes!

    Each bite is sweet, tender, and have a perfect amount of fresh lemons.

    Poppy seed lemon cupcakes with zest on the side and a bottle of lemon kefir in the background.

    Lifeway Kefir

    I'm so excited to be partnering with Lifeway Kefir on this cupcake recipe. I used Lifeway Organic Lemon Whole Milk Kefir in the cupcakes to add even more lemon flavor.

    Baking with Lifeway Kefir is a must for me because of all the added benefits, including the amount of moisture it adds to baked goods.

    Not only is Lifeway Kefir a tart and tangy cultured milk smoothie that is packed full of protein and calcium, but each cup also contains 12 live and active cultures too.

    It's such a great choice to replace any recipe that calls for milk. Check out this strawberry lemonade cake and homemade lemon pop tarts I made using Lifeway Kefir too!

    Ingredients Needed

    Here are some notes on the ingredients we'll be using. For the full list of ingredients, look at the recipe card below.

    • Flour: ​I used all-purpose flour.
    • Oil: You can use either vegetable oil or canola.
    • Yogurt: Use either plain or vanilla yogurt. You could also use sour cream. 
    • Lemons: Use fresh lemons. You need both the juice and the zest. Stay away from lemon extract.
    • Lifeway Organic Lemon Whole Milk Kefir: This adds an extra layer of lemon flavor and makes the cupcakes super moist and tender.
    • Poppy Seeds: ​These can be found at your local grocery store in the spice aisle.
    • Unsalted Butter: ​Use room temperature butter. 
    • Powdered Sugar: ​Also called confectioners or icing sugar.
    Ingredients needed: flour, salt, baking powder, oil, eggs, sugar, kefir, vanilla, poppy seeds, yogurt, and lemons.

    Instructions

    Here are the step by step instructions on how to make this lemon poppy seed cupcake recipe.

    Step 1: Dry ingredients. In a medium bowl, whisk together the flour, baking powder, and salt. Set aside.

    Step 2: Wet ingredients. In a large bowl, whisk together the granulated sugar, oil, egg, egg white, yogurt, lemon zest, lemon juice, and vanilla extract until combined.

    Wet ingredients in a medium glass bowl.
    Flour mixture being whisked into the wet ingredients in a bowl.

    Step 3: Combine the ingredients. Alternate adding the flour mixture and the kefir milk to the wet ingredients (flour, milk, flour), whisking just until everything is combined. Then whisk in the poppy seeds.

    Milk being whisked into the cupcake batter.
    Lemon poppy seed cupcake batter in a large glass bowl.

    Step 4: Bake. Fill the cupcake liners ⅔ of the way full and bake for 15-20 minutes. Let the cupcakes cool for 10 minutes in the pan before transferring them over to a wire rack.

    Muffin pan filled with lemon cupcake batter.
    Freshly baked poppy seed lemon cupcakes.

    Lemon Frosting

    In a large bowl of a stand mixer using the paddle attachment, cream the butter on medium-high speed until smooth.

    Add the powdered sugar, lemon juice, and poppy seeds and mix on low speed until combined.

    Then increase to high speed and beat until smooth and fluffy.

    Scrape the frosting into a piping bag and frost the tops of each cupcake. I used my Wilton 6B piping tip.

    Lemon cupcake with black poppy seeds in the cake. The cupcakes are topped with lemon buttercream.

    Storage Tips

    Keep any leftover cupcakes in an airtight container on the counter for up to 2 days or in the refrigerator for up to 5 days.

    Expert Baking Tips

    • Measuring Flour: To help ensure you don’t add extra flour, follow these three simple steps: 1) Fluff up the flour using a fork. 2) Spoon the flour into your measuring cup. 3) Scrape a knife across the top of the measuring cup to level out the flour.
    • Room Temperature Ingredients: If an ingredient calls to be at room temperature before baking, do it. This helps to ensure the best quality in both flavor and texture. If you don't, the cupcakes texture will be off.
    • Cupcake Batter: Fill the cupcake liners ⅔ of the way full, which is just under 3 tablespoons of batter. I used my cookie scoop to make this step easier.

    Recipe Variations

    Fill the cupcakes.​ These cupcakes would taste amazing with a lemon curd filling! Just use my recipe from my lemon curd cookies.

    Cream cheese frosting. ​Would you prefer a lemon cream cheese frosting instead? Just substitute one stick of butter with 8 ounces of cream cheese.

    Recipe FAQs

    Can I Leave The Poppy Seeds Out?

    Absolutely! I love the extra crunch and flavor they add to these cupcakes but you can leave them out if you'd like.

    Can These Be Made Ahead Of Time?

    Yes they can. Simply make the cupcakes the night before and then make the frosting the day of. Decorate and serve!

    Can I Use Lemon Extract Instead Of Fresh Lemons?

    No, I don't recommend that. You need both the juice and the zest anyways from a lemon, so use fresh.

    A bite taken out of a lemon poppy seed cupcake with lemon slices and a bottle of kefir milk in the background.

    If you made this recipe, please leave a comment and star rating below. I love hearing from you! Also, please tag me on Instagram and check out my Pinterest for even more recipe ideas.

    It brings me so much joy to see you make my recipes. 🙂

    Happy Baking!

    More Cupcake Recipes

    • Easy Black Forest Cupcakes
    • Blackberry cupcakes with fresh blackberries.
      Blackberry Cupcakes with Blackberry Buttercream
    • A half dozen of strawberry cupcakes with fresh whipped cream.
      Strawberries and Cream Cupcakes
    • Raspberry Coconut Cupcakes

    📖 Recipe

    Lemon Poppy Seed Cupcakes

    Karissa Parrish
    These lemon poppy seed cupcakes are moist lemon cupcakes filled with crunchy poppy seeds and topped with a creamy lemon buttercream frosting. They make for a perfect springtime treat!
    5 from 1 vote
    Print Recipe Pin Recipe
    Prep Time 10 minutes mins
    Cook Time 15 minutes mins
    Cool Time 10 minutes mins
    Total Time 35 minutes mins
    Course Dessert
    Cuisine American
    Servings 12 cupcakes

    Equipment

    • 12-count muffin pan
    • Cupcake Liners
    • Mixing Bowls
    • Electric Stand Mixer
    • Citrus Zester

    Ingredients:
     
     

    Lemon Cupcakes

    • 1 ¼ cups all-purpose flour
    • 1 teaspoon baking powder
    • ½ teaspoon salt
    • ¾ cup sugar
    • ⅓ cup vegetable oil (or canola)
    • 1 large egg, room temperature
    • 1 large egg white, room temperature
    • ¼ cup yogurt (plain or vanilla), room temperature
    • 2 tablespoons lemon zest
    • 2 tablespoons lemon juice
    • 1 teaspoon vanilla extract
    • ½ cup Lifeway Organic Lemon Whole Milk Kefir, room temperature
    • 2 tablespoons poppy seeds

    Lemon Frosting

    • 1 cup unsalted butter, room temperature 2 sticks
    • 3 cups powdered sugar
    • 2 tablespoons lemon juice
    • ½ teaspoon poppy seeds

    Instructions:
     

    • Preheat the oven to 350 degrees and line a 12-count muffin pan with cupcake liners.

    Lemon Cupcakes

    • In a medium mixing bowl, whisk together the flour, baking powder, and salt. Set aside.
    • In a large mixing bowl, whisk together the sugar, oil, egg, egg white, yogurt, lemon zest, lemon juice, and vanilla extract until combined.
    • Alternate adding the flour mixture and the kefir milk to the wet ingredients (flour, milk, flour), whisking just until everything is combined (be careful not to overmix). Then whisk in the poppy seeds.
    • FIll each cupcake liner ⅔ of the way full (just under 3 tablespoons of batter) and bake for 15-20 minutes. Use a toothpick to check the centers for doneness and let the cupcakes cool for 10 minutes in the pan before transferring them over to a wire rack to cool completely.

    Lemon Frosting

    • In the bowl of an electric stand mixer using the paddle attachment, beat the butter on high speed until creamy (about 1-2 minutes). Add the powdered sugar, lemon juice, and poppy seeds and mix on low speed until combined (about 30 seconds).
    • Then increase the speed to high and beat for another 1-2 minutes (frosting should be light and creamy).
    • Frost the cooled cupcakes. I placed the frosting in a piping bag and used the Wilton 6B piping tip.
    • Store leftover cupcakes in an airtight container at room temperature for up to 2 days or in the refrigerator for up to 5 days.

    Notes:

    • Measuring Flour: To help ensure you don’t add extra flour, follow these three simple steps: 1) Fluff up the flour using a fork. 2) Spoon the flour into your measuring cup. 3) Scrape a knife across the top of the measuring cup to level out the flour.
    • Room Temperature Ingredients: If an ingredient calls to be at room temperature before baking, do it. This helps to ensure the best quality in both flavor and texture. If you don't, the cupcakes texture will be off.
    • Cupcake Batter: Fill the cupcake liners ⅔ of the way full, which is just under 3 tablespoons of batter. I used my cookie scoop to make this step easier.

    Nutrition

    Serving: 1cupcakeCalories: 424kcalCarbohydrates: 54gProtein: 3gFat: 23gSaturated Fat: 11gPolyunsaturated Fat: 5gMonounsaturated Fat: 5gTrans Fat: 1gCholesterol: 43mgSodium: 145mgPotassium: 42mgFiber: 1gSugar: 43gVitamin A: 494IUVitamin C: 3mgCalcium: 64mgIron: 1mg
    US Customary - Metric
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    5 from 1 vote (1 rating without comment)

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    Hi, I'm Karissa! I am the professional home baker and food photographer here at Ginger Snap's Baking Affairs. I have 6+ years of experience creating easy desserts that every home baker can make in their own kitchens! You'll find many desserts here, including cakes, cupcakes, frostings, and cookies. I'm so glad you're here and happy baking!

    More about me →

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